105.0K
SA10/10 love it sm #transcriptomics #rnaseq #reels
@sallyvonrohan
#Transcriptomics
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WY๐๐ฝ New video ๐ง 3D spatial transcriptomics may hold clues to future therapies for brain diseases. The technique measures gene expression from the RNA found in cells. It tells us what type of cell it is, exactly where it is, and can also indicate how a cell may interact with neighboring structures to the sides, above or below. ๐ฌ Imaging performed with spinning disk microscopy.
@campusbiotech #lightsheet #microscopy #brain #neuroscience #transcriptomics
@wyss.center
6.2K
CAAnyone anticipating interactions like this at the upcoming family holiday gatherings? I work in 3 clinical roles and also do research as part of my job.
1) Emergency Medicine: as seen on TV (kind of...) - anyone and everyone who walks through or is wheeled through the doors of the emergency department.
2) Neurocritical Care: patients with neurological problems who are ill enough to need an intensive care unit. Some of the more common diagnoses include strokes, severe seizures, traumatic brain injuries, patients after brain or spine surgery, infectious or inflammatory conditions of the nervous system, and neuromuscular conditions requiring respiratory support.
3) Consults for Stroke Treatment: receive calls from doctors and APPs at ~30 hospitals about patients with potential stroke symptoms, mostly from emergency departments but some from admitted patients, to make diagnostic and treatment decisions (have you heard of โclot bustersโ or clot removal procedures?)
4) Research: primarily related to a type of stroke - we test different โbiomarkersโ from the patientsโ blood to better understand harmful vs. beneficial inflammatory processes after the stroke (transcriptomics, extracellular vesicle, metabolomics, proteomics).
#doctor #medicine #doctorgoals #doctordoctor #medicineman
@catholicdoctordad
2.6K
HH๐งฌSTIM, a new tool developed at Janelia & @mdc.berlin, aligns sections of irregularly spaced 2D spatial transcriptomics data & renders them as images to reconstruct 3D volumes of gene expression, allowing researchers to see how all genes are expressed & organized in 3D tissue.
๐ฅThis movie shows a 3D rendering of aligned SlideSeq data, with gene Calm2 shown in white, gene Ptdgs in green and gene Mbp in red. Credit: Preibisch et al.
#science #research #computerscience #transcriptomics #biology
@hhmijanelia
749
OM๐๐ฏ๐๐ซ ๐ฌ๐๐๐ง ๐ ๐ฉ๐ฅ๐จ๐ญ ๐๐ฎ๐ฅ๐ฅ ๐จ๐ ๐๐จ๐ฅ๐จ๐ซ๐๐ฎ๐ฅ ๐๐จ๐ญ๐ฌ ๐๐ง๐ ๐๐๐๐ง ๐ญ๐จ๐ฅ๐, โ๐๐๐๐ก ๐จ๐ง๐ ๐ข๐ฌ ๐ ๐๐๐ฅ๐ฅโ?
Yep, thatโs probably a t-SNE plot โ one of the most popular ways to visualize single-cell RNA-seq data.
๐ค But hold onโ
๐๐ฐ๐ธ ๐ฅ๐ฐ ๐ธ๐ฆ ๐จ๐ฐ ๐ง๐ณ๐ฐ๐ฎ 20,000+ ๐จ๐ฆ๐ฏ๐ฆ๐ด ๐ฑ๐ฆ๐ณ ๐ค๐ฆ๐ญ๐ญ...๐ต๐ฐ ๐ข ๐ฏ๐ฆ๐ข๐ต ๐ญ๐ช๐ต๐ต๐ญ๐ฆ ๐ฑ๐ญ๐ฐ๐ต ๐ด๐ฉ๐ฐ๐ธ๐ช๐ฏ๐จ ๐ค๐ญ๐ถ๐ด๐ต๐ฆ๐ณ๐ด, ๐ฑ๐ข๐ต๐ต๐ฆ๐ณ๐ฏ๐ด, ๐ข๐ฏ๐ฅ ๐ค๐ฆ๐ญ๐ญ ๐ต๐บ๐ฑ๐ฆ๐ด?
๐๐๐ญโ๐ฌ ๐๐ซ๐๐๐ค ๐ข๐ญ ๐๐จ๐ฐ๐ง. ๐
๐ฏ Single-cell RNA-seq gives us massive data โ each cell is basically a mini spreadsheet of gene expression.
๐ง Our brains canโt visualize 20,000 dimensions โ so we need something to reduce it to 2D or 3D.
Thatโs where ๐ญ-๐๐๐ (๐ญ-๐๐ข๐ฌ๐ญ๐ซ๐ข๐๐ฎ๐ญ๐๐ ๐๐ญ๐จ๐๐ก๐๐ฌ๐ญ๐ข๐ ๐๐๐ข๐ ๐ก๐๐จ๐ซ ๐๐ฆ๐๐๐๐๐ข๐ง๐ ) steps in.
Think of t-SNE like this: It takes cells that are similar, based on their gene expression, and puts them close together in the plot.
๐๐ฆ๐ญ๐ญ๐ด ๐ต๐ฉ๐ข๐ต ๐ข๐ณ๐ฆ ๐ท๐ฆ๐ณ๐บ ๐ฅ๐ช๐ง๐ง๐ฆ๐ณ๐ฆ๐ฏ๐ต? ๐๐ฉ๐ฆ๐บ ๐ญ๐ข๐ฏ๐ฅ ๐ง๐ข๐ณ ๐ข๐ฑ๐ข๐ณ๐ต.
๐ก The result? You get a plot that looks like art but actually reflects meaningful biological patterns โ like cell types, disease states, or treatment response.
๐จ ๐๐ณ๐ฐ ๐ต๐ช๐ฑ: ๐๐ญ๐ธ๐ข๐บ๐ด ๐ค๐ฐ๐ฎ๐ฃ๐ช๐ฏ๐ฆ ๐ต-๐๐๐ ๐ธ๐ช๐ต๐ฉ ๐ฃ๐ช๐ฐ๐ญ๐ฐ๐จ๐ช๐ค๐ข๐ญ ๐ฌ๐ฏ๐ฐ๐ธ๐ญ๐ฆ๐ฅ๐จ๐ฆ ๐ข๐ฏ๐ฅ ๐ง๐ฐ๐ญ๐ญ๐ฐ๐ธ-๐ถ๐ฑ ๐ข๐ฏ๐ข๐ญ๐บ๐ด๐ช๐ด.
๐ If you're figuring this out for the first timeโyouโre not alone.
We're hosting a ๐-๐๐๐ฒ ๐๐๐ง๐๐ฌ-๐๐ง ๐๐ง๐ฅ๐ข๐ง๐ ๐๐ง๐ญ๐ซ๐จ๐๐ฎ๐๐ญ๐ข๐จ๐ง ๐ญ๐จ ๐๐๐๐๐-๐๐๐ช ๐๐๐ญ๐ ๐๐ง๐๐ฅ๐ฒ๐ฌ๐ข๐ฌ ๐ฐ๐จ๐ซ๐ค๐ฌ๐ก๐จ๐ฉ. Master key workflowsโfrom preprocessing and quality control to clustering, cell type annotation, and functional analysis. Learn how to analyze ScRNA-seq data gaining hands-on experience in data cleaning, visualization, and interpretation.
๐ ๐๐๐ ๐ข๐ฌ๐ญ๐๐ซ ๐ก๐๐ซ๐: https://forms.gle/eNJp1T32U6Soa4Af9
#scRNASeq #Bioinformatics #SingleCell #Transcriptomics #Seurat #CellRanger #DataScience #Genomics #Workshop #ResearchTraining
@omics_logic
2.8K
BRSpatial transcriptomics technologies opened the door for new kinds of biological measurements, allowing scientists to generate detailed maps of where genes are expressed in tissue. Now, a new approach eliminates the need for time-intensive specialized imaging, making spatial transcriptomics easier for more scientists to use.
โOur work converts imaging into molecular biology โ just a reaction in a test tube,โ said Fei Chen, senior author on the study. โThat means anybody can use this approach if they have the algorithm and some common materials.โ
Learn more at the link in our bio.
@broadinstitute
421
ZYCapture the full transcriptome without wasting reads on rRNA! Zymo-Seq RiboFreeยฎ Total RNA Library Kit delivers universal rRNA depletion and generates libraries in as little as 4 hours.
This NGS November, celebrate innovation with us. Unlock our biggest savings of the yearโlimited time only!
Click the link in our bio to optimize your NGS workflow today.
#NGS #NextGenSequencing #RNASeq #Transcriptomics #LibraryPrep #RiboFree #NGSWorkflow #ResearchInnovation #NGSNovember
@zymoresearch
1.2K
EVIf youโve survived med school, youโve got this๐ช๐ผ
#medschool #doctorslife #womeninmedicine #medicalstudies
@evamoreino
56.3K
ELSpatial biology techniques (especially spatial transcriptomics) are revolutionary because they allow researchers to map single-cell gene expression within tissue sections. This allows deeper understanding of the spatial context of gene expression in every cell within the tissue.
Butโฆthese techniques can be extremely expensive as they are still very niche. Moreover, the cost of specialised slides and the requirement for next-generation sequencing dramatically increases the cost of the full workflow.
For example, the cost of a Visium HD slide (which can fit two tissue sections) including the NGS is ~โฌ15,000... so if you decide to run 4 samples for Visium HD you can easily expect an invoice of more than 30000โฌ๐ On the other hand, the amount of data researchers get with such experiments is also quite impressive!
#phd #lab #research #laboratorio #laboratory #technology
@elina_in_science
568
AL๐ Vocรช me respeita porque eu estou simplesmente me desdobrando em mil pra aprender o bรกsico de programaรงรฃo e analisar meus dados com um certo nรญvel de qualidade.
#cienciabrasileira #bioinformatica #stembaddie #transcriptomics #research
@alana.pesquisadora
680
COUnlock the secrets of gene expression with RNA-seq analysis.
Master the pipeline from raw reads to biological insight.
This course covers:
RNA-seq data preprocessing and alignment
Differential gene expression analysis
Functional annotation and pathway enrichment
Real datasets, hands-on analysis, real impact
Whether youโre entering the world of transcriptomics or sharpening your analysis skills, this course equips you with what todayโs research teams demand.
Runs weekly. Limited seats.
Register now: https://forms.gle/osWrVnmvVSv1b3QY7
#RNASeq #Transcriptomics #Bioinformatics #GeneExpression #ColorsHub #DataScience #GenomicAnalysis #ColorsEducationalHub #MolecularBiology #NGS
@colors_educationalhub
99
MA๐จ The buzz is real. The anticipation is growing.
Our 92nd Research Project is almost hereโฆ and itโs going to change the game in RNA drug discovery ๐งฌ๐
From sequencing to structure โ from molecules to medicines โ weโre mapping the druggable RNA universe.
๐ Stay with us. The drop is coming sooner than you think. โจ https://bdglifesciences.com/research-project
๐ฒ Join our WhatsApp for updates on Jobs, News, Training, Workshops & Research Projects: https://whatsapp.com/channel/0029VagPqwB6GcG7TZzIPi2R
#NGS #RNASeq #Transcriptomics #RNA #DrugDiscovery #Bioinformatics #DrugDesign #RNAtherapeutics #MolecularDocking #Pharma #Biotech #Genomics #bdglifesciences #bdgtraining #bdgworkshops #bdgresearchprojects #biodiscovery
@marketing_bdglifesciences
โจ #Transcriptomics Discovery Guide
Instagram hosts thousands of posts under #Transcriptomics, creating one of the platform's most vibrant visual ecosystems. This massive collection represents trending moments, creative expressions, and global conversations happening right now.
#Transcriptomics is one of the most engaging trends on Instagram right now. With over thousands of posts in this category, creators like @sallyvonrohan, @elina_in_science and @catholicdoctordad are leading the way with their viral content. Browse these popular videos anonymously on Pictame.
What's trending in #Transcriptomics? The most watched Reels videos and viral content are featured above. Explore the gallery to discover creative storytelling, popular moments, and content that's capturing millions of views worldwide.
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๐น Video Trends: Discover the latest Reels and viral videos
๐ Hashtag Strategy: Explore trending hashtag options for your content
๐ Featured Creators: @sallyvonrohan, @elina_in_science, @catholicdoctordad and others leading the community
FAQs About #Transcriptomics
With Pictame, you can browse all #Transcriptomics reels and videos without logging into Instagram. No account required and your activity remains private.
Content Performance Insights
Analysis of 12 reels
๐ก Top performing posts average 42.6K views (2.9x above average). Moderate competition - consistent posting builds momentum.
Post consistently 3-5 times/week at times when your audience is most active
Content Creation Tips & Strategy
๐ก Top performing content gets over 10K views - focus on engaging first 3 seconds
๐น High-quality vertical videos (9:16) perform best for #Transcriptomics - use good lighting and clear audio
โ๏ธ Detailed captions with story work well - average caption length is 668 characters
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Explore Transcriptomics#transcriptome#virallink transcriptomic analysis#virallink transcriptomic data#diy transcriptomics course review